Read BLAST tab-separated output
read_blast(
file,
col_names = def_names("blast"),
col_types = def_types("blast"),
comment = "#",
swap_query = FALSE,
...
)a tibble with the BLAST output
Either a path to a file, a connection, or literal data (either a single string or a raw vector).
Files ending in .gz, .bz2, .xz, or .zip will
be automatically uncompressed. Files starting with http://,
https://, ftp://, or ftps:// will be automatically
downloaded. Remote gz files can also be automatically downloaded and
decompressed.
Literal data is most useful for examples and tests. To be recognised as
literal data, the input must be either wrapped with I(), be a string
containing at least one new line, or be a vector containing at least one
string with a new line.
Using a value of clipboard() will read from the system clipboard.
column names to use. Defaults to def_names("blast")
compatible with blast tabular output (--outfmt 6/7 in blast++ and -m8
in blast-legacy). def_names() can easily be combined with extra
columns: col_names = c(def_names("blast"), "more", "things").
column types to use. Defaults to def_types("gff3") (see def_types).
character
if TRUE swap query and subject columns using swap_query()
on import.
additional parameters, passed to read_tsv