up2date

gt_load

conditionally update glmmTMB object fitted with an old TMB version
Load data from system file, updating glmmTMB objects

Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.

Mollie Brooks

glmmTMB

Generalized Linear Mixed Models using Template Model Builder

Ben Bolker

Kasper Kristensen

Martin Maechler

Arni Magnusson

Maeve McGillycuddy

Hans Skaug

Anders Nielsen

Casper Berg

Koen van Bentham

Nafis Sadat

Daniel Lüdecke

Russ Lenth

Joseph O'Brien

Charles J. Geyer

Mikael Jagan

Brenton Wiernik

Daniel B. Stouffer

up2date function

<dl><dt>oldfit</dt>
<dd>a fitted glmmTMB object</dd>
<dt>update_gauss_disp</dt>
<dd>update <code>betad</code> from variance to SD parameterization?</dd>
<dt>fn</dt>
<dd>partial path to system file (e.g. test_data/foo.rda)</dd>
<dt>verbose</dt>
<dd>print names of updated objects?</dd>
<dt>mustWork</dt>
<dd>fail if file not found?</dd>
<dt>...</dt>
<dd>values passed through to <code>up2date</code></dd></dl>

Arguments

conditionally update glmmTMB object fitted with an old TMB version — up2date

<dl>

<dt>oldfit</dt>
<dd>a fitted glmmTMB object</dd>


<dt>update_gauss_disp</dt>
<dd>update <code>betad</code> from variance to SD parameterization?</dd>


<dt>fn</dt>
<dd>partial path to system file (e.g. test_data/foo.rda)</dd>


<dt>verbose</dt>
<dd>print names of updated objects?</dd>


<dt>mustWork</dt>
<dd>fail if file not found?</dd>


<dt>...</dt>
<dd>values passed through to <code>up2date</code></dd>

</dl>

conditionally update glmmTMB object fitted with an old TMB version

up2date: conditionally update glmmTMB object fitted with an old TMB version

Description

Usage

Arguments