Usage
as.GOTerms.frame(myGOTermsList, na.rm=TRUE)
as.GOTerms.list(genelist, probeType, orgPackage=NULL, anotPkg=NULL, onto="any", na.rm=TRUE)
BioCpack2EntrezIDS(anotPkg, na.rm=TRUE)
BioCpack2Profiles(anotPkg, orgPackage, level=2, na.rm=TRUE, expanded=FALSE)
BioCprobes2Entrez(probeslist , anotPkg, na.rm=TRUE)
GOTermsFrame2GOTermsList(myGOTermsFrame, evid=FALSE)
Arguments
myGOTermsList
GOTermsList object to transform
myGOTermsFrame
GOTermsFrame object to transform
genelist
List of genes (Entrez Ids) to transform
evid
Type of evidence supporting the selected GO Terms
na.rm
Flag indicating if those ids returning NA must be removed from the output
probeType
Type of probes to transform into Entrez Ids
probeslist
List of probes to transform into Entrez Ids
orgPackage
Name of the organism ('org.Xx.eg.db') annotation package
anotPkg
Name of the chip annotation package
level
GO level at which the profile is built
expanded
Flag to decide if an expanded profile has to be computed