genes


  This data set gives the RNA-seq data from an experiment measuring the effects of androgen stimulation on prostate cancer.  
  Information is given about all (ENSEMBL) genes for which there was at least one mapping read in either the treated or untreated RNA-seq experiment.
  The <code>edgeR</code> package was used to determine which genes were differentially expressed.  The details of the analysis can be found in the <code>goseq</code> vignette.


datasets

Detects Gene Ontology and/or other user defined categories
which are over/under represented in RNA-seq data

Nadia Davidson

goseq

Gene Ontology analyser for RNA-seq and other length biased data

genes function

A named vector of ENSEMBL genes, with 1 representing differential expression.

Format

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model, 2008, Li et. al.

Source

This data set gives the RNA-seq data from an experiment measuring the effects of androgen stimulation on prostate cancer.  
  Information is given about all (ENSEMBL) genes for which there was at least one mapping read in either the treated or untreated RNA-seq experiment.
  The <code>edgeR</code> package was used to determine which genes were differentially expressed.  The details of the analysis can be found in the <code>goseq</code> vignette.

genes: Androgen stimulation of prostate cancer Cell lines.

Description

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Source

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Examples