CreateConvolutionTable

Create Convolution Table from a Seurat object

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

CreateConvolutionTable function

<dl><dt>data</dt>
<dd>a Seurat object</dd>
<dt>n.neighbors</dt>
<dd>the number of neighbors to be convoluted</dd></dl>

Arguments

Create Convolution Table from a Seurat object — CreateConvolutionTable

<dl>

<dt>data</dt>
<dd>a Seurat object</dd>


<dt>n.neighbors</dt>
<dd>the number of neighbors to be convoluted</dd>

</dl>

CreateConvolutionTable: Create Convolution Table from a Seurat object

Description

Usage

Value

Arguments

Details