CreatePdfs

CreatePdfsParameters

CreatePdfsComparison

CreatePdfsProfiles

These methods are invoked by GRAND3 to generate pdfs.

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

CreatePdfs function

<dl><dt>data</dt>
<dd>a grandR object</dd>
<dt>labels</dt>
<dd>which label to consider (see GetDiagnosticParameters); if NULL, all available estimators are used</dd>
<dt>estimators</dt>
<dd>which estimator to consider (see GetDiagnosticParameters); if NULL, all available estimators are used</dd></dl>

Arguments

<ul>
<li><code>CreatePdfs()</code>: Create all pdfs</li>
<li><code>CreatePdfsParameters()</code>: Create pdfs visualizing the estimated parameters</li>
<li><code>CreatePdfsComparison()</code>: Create pdfs comparing the estimated parameters</li>
<li><code>CreatePdfsProfiles()</code>: Create pdfs visualizing the profile likelihoods</li>
</ul>

Functions

Convencience methods for creating QC pdfs — CreatePdfs

<dl>

<dt>data</dt>
<dd>a grandR object</dd>


<dt>labels</dt>
<dd>which label to consider (see GetDiagnosticParameters); if NULL, all available estimators are used</dd>


<dt>estimators</dt>
<dd>which estimator to consider (see GetDiagnosticParameters); if NULL, all available estimators are used</dd>

</dl>

CreatePdfs: Convencience methods for creating QC pdfs

Description

Usage

Arguments

Functions