FitKineticsPulseR

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

FitKineticsPulseR function

<dl><dt>data</dt>
<dd>A grandR object</dd>
<dt>name</dt>
<dd>the user defined analysis name to store the results</dd>
<dt>time</dt>
<dd>The column in the column annotation table representing the labeling duration</dd></dl>

Arguments

Fit kinetics using pulseR — FitKineticsPulseR

<dl>

<dt>data</dt>
<dd>A grandR object</dd>


<dt>name</dt>
<dd>the user defined analysis name to store the results</dd>


<dt>time</dt>
<dd>The column in the column annotation table representing the labeling duration</dd>

</dl>

FitKineticsPulseR: Fit kinetics using pulseR

Description

Usage

Value

Arguments

Details