PlotAnalyses

Convenience function to make the same type of plot for multple analyses.

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

PlotAnalyses function

<dl><dt>data</dt>
<dd>the grandR object that contains the data to be plotted</dd>
<dt>plot.fun</dt>
<dd>the plottinf function to apply</dd>
<dt>analyses</dt>
<dd>the analyses to plot (default: all)</dd>
<dt>add</dt>
<dd>additional ggplot (e.g., geoms) objects to add</dd>
<dt>...</dt>
<dd>passed further to plot.fun</dd></dl>

Arguments

Convenience function to make the same type of plot for multple analyses. — PlotAnalyses

<dl>

<dt>data</dt>
<dd>the grandR object that contains the data to be plotted</dd>


<dt>plot.fun</dt>
<dd>the plottinf function to apply</dd>


<dt>analyses</dt>
<dd>the analyses to plot (default: all)</dd>


<dt>add</dt>
<dd>additional ggplot (e.g., geoms) objects to add</dd>


<dt>...</dt>
<dd>passed further to plot.fun</dd>

</dl>

PlotAnalyses: Convenience function to make the same type of plot for multple analyses.

Description

Usage

Value

Arguments