PlotModelConv

This belongs to the third kind (model) of diagnostic plots

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

PlotModelConv function

<dl><dt>data</dt>
<dd>a grandR object</dd>
<dt>label</dt>
<dd>which label to consider (see GetDiagnosticParameters); cannot be NULL</dd>
<dt>estimator</dt>
<dd>which estimator to consider (see GetDiagnosticParameters); cannot be NULL</dd>
<dt>model</dt>
<dd>which model to consider (see GetDiagnosticParameters); cannot be NULL</dd></dl>

Arguments

Diagnostic plot for estimated models (global conversion rate) — PlotModelConv

<dl>

<dt>data</dt>
<dd>a grandR object</dd>


<dt>label</dt>
<dd>which label to consider (see GetDiagnosticParameters); cannot be NULL</dd>


<dt>estimator</dt>
<dd>which estimator to consider (see GetDiagnosticParameters); cannot be NULL</dd>


<dt>model</dt>
<dd>which model to consider (see GetDiagnosticParameters); cannot be NULL</dd>

</dl>

PlotModelConv: Diagnostic plot for estimated models (global conversion rate)

Description

Usage

Value

Arguments

Details