PlotSimulation

The input data is usually created by <code>SimulateKinetics</code>

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

PlotSimulation function

<dl><dt>sim.df</dt>
<dd>the input data frame</dd>
<dt>ntr</dt>
<dd>show the ntr?</dd>
<dt>old</dt>
<dd>show old RNA?</dd>
<dt>new</dt>
<dd>show new RNA?</dd>
<dt>total</dt>
<dd>show total RNA?</dd>
<dt>line.size</dt>
<dd>which line size to use</dd></dl>

Arguments

Plot simulated data — PlotSimulation

<dl>

<dt>sim.df</dt>
<dd>the input data frame</dd>


<dt>ntr</dt>
<dd>show the ntr?</dd>


<dt>old</dt>
<dd>show old RNA?</dd>


<dt>new</dt>
<dd>show new RNA?</dd>


<dt>total</dt>
<dd>show total RNA?</dd>


<dt>line.size</dt>
<dd>which line size to use</dd>

</dl>

PlotSimulation: Plot simulated data

Description

Usage

Value

Arguments

See Also

Examples