Slots

DropSlot

AddSlot

Get slot names and add or remove slots

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

Slots function

<dl><dt>data</dt>
<dd>A grandR object</dd>
<dt>pattern</dt>
<dd>a regular expression matched against slot names</dd>
<dt>name</dt>
<dd>the slot name</dd>
<dt>matrix</dt>
<dd>the data matrix for the new slot</dd>
<dt>set.to.default</dt>
<dd>set the new slot as the default slot?</dd>
<dt>warn</dt>
<dd>issue a warning if the slot name already exists and is overwritten</dd></dl>

Arguments

<ul>
<li><code>Slots()</code>: Obtain the slot names</li>
<li><code>DropSlot()</code>: Remove one or several slots from this grandR object</li>
<li><code>AddSlot()</code>: Add an additional slot to this grandR object</li>
</ul>

Functions

Slot functions — Slots

<dl>

<dt>data</dt>
<dd>A grandR object</dd>


<dt>pattern</dt>
<dd>a regular expression matched against slot names</dd>


<dt>name</dt>
<dd>the slot name</dd>


<dt>matrix</dt>
<dd>the data matrix for the new slot</dd>


<dt>set.to.default</dt>
<dd>set the new slot as the default slot?</dd>


<dt>warn</dt>
<dd>issue a warning if the slot name already exists and is overwritten</dd>

</dl>

Slots: Slot functions

Description

Usage

Value

Arguments

Functions

See Also

Examples