Summarize

Helper function to work in conjunction with GetMatrix or similar to obtain a summarized matrix.

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

Summarize function

<dl><dt>mat</dt>
<dd>the matrix to summarize</dd>
<dt>summarize.mat</dt>
<dd>the matrix defining how to summarize (see details)</dd></dl>

Arguments

Summarize a data matrix — Summarize

<dl>

<dt>mat</dt>
<dd>the matrix to summarize</dd>


<dt>summarize.mat</dt>
<dd>the matrix defining how to summarize (see details)</dd>

</dl>

Summarize: Summarize a data matrix

Description

Usage

Value

Arguments

Details