UpdateSymbols

If your input files only contained ENSEMBL ids, use this to add gene symbols!

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

UpdateSymbols function

<dl><dt>data</dt>
<dd>a grandR object</dd>
<dt>species</dt>
<dd>the species the genes belong to (eg "Homo sapiens"); can be NULL, then the species is inferred from gene ids (see details)</dd>
<dt>current.value</dt>
<dd>What it the current value in the symbols field?</dd></dl>

Arguments

Update symbols using biomaRt — UpdateSymbols

<dl>

<dt>data</dt>
<dd>a grandR object</dd>


<dt>species</dt>
<dd>the species the genes belong to (eg "Homo sapiens"); can be NULL, then the species is inferred from gene ids (see details)</dd>


<dt>current.value</dt>
<dd>What it the current value in the symbols field?</dd>

</dl>

UpdateSymbols: Update symbols using biomaRt

Description

Usage

Value

Arguments

Details