check.analysis

check.slot

check.mode.slot

Internal functions to check for a valid analysis or slot names.

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

check.analysis function

<dl><dt>data</dt>
<dd>a grandR object</dd>
<dt>analyses</dt>
<dd>a regex to be matched to analysis names</dd>
<dt>regex</dt>
<dd>interpret as regular expression</dd>
<dt>slot</dt>
<dd>a slot name</dd>
<dt>allow.ntr</dt>
<dd>whether to allow for the value "ntr" (and throw an error in case)</dd>
<dt>mode.slot</dt>
<dd>a mode.slot</dd></dl>

Arguments

Internal functions to check for a valid analysis or slot names. — check.analysis

<dl>

<dt>data</dt>
<dd>a grandR object</dd>


<dt>analyses</dt>
<dd>a regex to be matched to analysis names</dd>


<dt>regex</dt>
<dd>interpret as regular expression</dd>


<dt>slot</dt>
<dd>a slot name</dd>


<dt>allow.ntr</dt>
<dd>whether to allow for the value "ntr" (and throw an error in case)</dd>


<dt>mode.slot</dt>
<dd>a mode.slot</dd>

</dl>

check.analysis: Internal functions to check for a valid analysis or slot names.

Description

Usage

Value

Arguments

Details