call_geno: Genotype with kmeans using three clusters
Description
Genotype with kmeans using three clusters
Usage
call_geno(theta, intensity, clusterm = c(0.2, 0.5, 0.8), delthresh = NULL)
Arguments
theta
Vector with theta values.
intensity
Vector with intensity values.
clusterm
Vector containing the cluster means.
delthresh
Threshold for intensity based deletion calling.
Value
List containing genotypes, b-allele frequencies and R ratios.