gsrc (version 1.1)

rename_samples: Rename sample names

Description

Rename sample names

Usage

rename_samples(dat, ...)
"rename_samples"(dat, samples, suffix = NULL, ...)
"rename_samples"(dat, samples, ...)

Arguments

dat

List object, containing at least two matrices "intensity" and "theta". Or matrix with raw data.

...

Placeholder for generic function.

samples

Matrix or data.frame with two columns: 1. (prefix of) colnames of dat and 2. meaningful sample name.

suffix

Vector of two characters (e.g. c("Grn.idat", "Red.idat")) describing which suffix should be appended to the sample name.

Value

List with two matrices "intensity" (signal intensities) and "theta" (genotype value).

Examples

if(require(brassicaData)){
data(raw_napus, package = "brassicaData")
samples <- read_sample_sheets(files = list.files(system.file("extdata",
package = "brassicaData"), full.names = TRUE, pattern = "csv"))
raw_napus <- rename_samples(raw_napus, samples = samples[,2:1], suffix = c("_Grn", "_Red"))
}