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gss (version 2.2-8)

esc: Embryonic Stem Cell from Mouse

Description

Data concerning mouse embryonic stem cell gene expression and transcription factor association strength.

Usage

data(esc)

Arguments

Format

A data frame containing 1027 genes with the following variables.

y1Gene expression after 4 days.
y2Gene expression after 8 days.
y3Gene expression after 14 days.
klf4Score of TFAS with KLF4.
nanogScore of TFAS with NANOG.
oct4Score of TFAS with OCT4.
sox2Score of TFAS with SOX2.
clusterIDCluster identification.

References

Cai, J., Xie, D., Fan, Z., Chipperfield, H., Marden, J., Wong, W. H., and Zhong, S. (2010), Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells. PLoS Computational Biology, 6, e1000707.

Ouyang, Z., Zhou, Q., and Wong, W. H. (2009), chip-seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. Proceedings of the National Academy of Sciences of USA, 106, 21521--21526.