parse.snps

seqs

seqnames


  Extracts the first occurence of a pattern like [A/T], along with the
  5' and 3' flanking sequences.


Assorted tools for genetic association analyses.  The
current focus is on implementing (either exactly or
approximately) regression analyses using summary statistics
instead of using subject-specific data.  So far, functions
exist to support multi-SNP risk score analyses, multi-SNP
conditional regression analyses, and multi-phenotype analyses,
using summary statistics.  There are helper functions for
reading and manipulating subject-specific genotype data, which
provide a platform for calculating the summary statistics, or
for using R to conduct other analyses not supported by specific
GWAS analysis tools.

parse.snps: Parse text representation of a SNP embedded in flanking sequences.

Description

Usage

Arguments

Value

Examples