remap.q2t

a vector of 0-offset positions in the query sequence.

qpos

blatres


  For a single BLAT match of a query sequence against a target sequence,
  a vector of nucleotide positions in the query sequence are remapped to
  the corresponding nucleotide positions in the target sequence.


Assorted tools for genetic association analyses.  The
current focus is on implementing (either exactly or
approximately) regression analyses using summary statistics
instead of using subject-specific data.  So far, functions
exist to support multi-SNP risk score analyses, multi-SNP
conditional regression analyses, and multi-phenotype analyses,
using summary statistics.  There are helper functions for
reading and manipulating subject-specific genotype data, which
provide a platform for calculating the summary statistics, or
for using R to conduct other analyses not supported by specific
GWAS analysis tools.

remap.q2t: Remap coordinates from BLAT query sequence to BLAT target sequence.

Description

Usage

Arguments

Value