snps.BRCA1


  Subset of the array annotation for the Illumina HumanOmniExpressExome
  array, at positions chr17:41,145,568-41,328,243, which covers (by a
  generous margin) all transcripts for the BRCA1 gene.


Assorted tools for genetic association analyses.  The
current focus is on implementing (either exactly or
approximately) regression analyses using summary statistics
instead of using subject-specific data.  So far, functions
exist to support multi-SNP risk score analyses, multi-SNP
conditional regression analyses, and multi-phenotype analyses,
using summary statistics.  There are helper functions for
reading and manipulating subject-specific genotype data, which
provide a platform for calculating the summary statistics, or
for using R to conduct other analyses not supported by specific
GWAS analysis tools.

Toby Johnson

Genetics ToolboX

snps.BRCA1 function

Format

<a href="http://www.illumina.com/support/array/array_kits/infinium_humanomniexpressexome_beadchip_kit/downloads.ilmn">http://www.illumina.com/support/array/array_kits/infinium_humanomniexpressexome_beadchip_kit/downloads.ilmn</a>

snps.BRCA1: Genotyping array annotation for SNPs near the BRCA1 gene.

Description

Usage

Arguments

Format

Source