fit_ref_sse

Fit a reference profile from multiple references using constrained least square

internal

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

fit_ref_sse function

<dl><dt>Y_obs</dt>
<dd>vector</dd>
<dt>lambdas_ref</dt>
<dd>matrix</dd>
<dt>gtf</dt>
<dd>dataframe</dd></dl>

Arguments

Fit a reference profile from multiple references using constrained least square — fit_ref_sse

<dl>

<dt>Y_obs</dt>
<dd>vector</dd>


<dt>lambdas_ref</dt>
<dd>matrix</dd>


<dt>gtf</dt>
<dd>dataframe</dd>

</dl>

fit_ref_sse: Fit a reference profile from multiple references using constrained least square

Description

Usage

Value

Arguments