get_exp_bulk

Aggregate into bulk expression profile

internal

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

get_exp_bulk function

<dl><dt>count_mat</dt>
<dd>dgCMatrix Gene expression counts</dd>
<dt>lambdas_ref</dt>
<dd>matrix Reference expression profiles</dd>
<dt>gtf</dt>
<dd>dataframe Transcript gtf</dd></dl>

Arguments

Aggregate into bulk expression profile — get_exp_bulk

<dl>

<dt>count_mat</dt>
<dd>dgCMatrix Gene expression counts</dd>


<dt>lambdas_ref</dt>
<dd>matrix Reference expression profiles</dd>


<dt>gtf</dt>
<dd>dataframe Transcript gtf</dd>

</dl>

get_exp_bulk: Aggregate into bulk expression profile

Description

Usage

Value

Arguments