l_bbinom

calculate joint likelihood of allele data

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

l_bbinom function

<dl><dt>AD</dt>
<dd>numeric vector Variant allele depth</dd>
<dt>DP</dt>
<dd>numeric vector Total allele depth</dd>
<dt>alpha</dt>
<dd>numeric Alpha parameter of Beta-Binomial distribution</dd>
<dt>beta</dt>
<dd>numeric Beta parameter of Beta-Binomial distribution</dd></dl>

Arguments

calculate joint likelihood of allele data — l_bbinom

<dl>

<dt>AD</dt>
<dd>numeric vector Variant allele depth</dd>


<dt>DP</dt>
<dd>numeric vector Total allele depth</dd>


<dt>alpha</dt>
<dd>numeric Alpha parameter of Beta-Binomial distribution</dd>


<dt>beta</dt>
<dd>numeric Beta parameter of Beta-Binomial distribution</dd>

</dl>

l_bbinom: calculate joint likelihood of allele data

Description

Usage

Value

Arguments

Examples