plot_bulks

Plot a group of pseudobulk HMM profiles

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

plot_bulks function

<dl><dt>bulks</dt>
<dd>dataframe Pseudobulk profiles annotated with "sample" column</dd>
<dt>...</dt>
<dd>additional parameters passed to plot_psbulk()</dd>
<dt>ncol</dt>
<dd>integer Number of columns</dd>
<dt>title</dt>
<dd>logical Whether to add titles to individual plots</dd>
<dt>title_size</dt>
<dd>numeric Size of titles</dd></dl>

Arguments

Plot a group of pseudobulk HMM profiles — plot_bulks

<dl>

<dt>bulks</dt>
<dd>dataframe Pseudobulk profiles annotated with "sample" column</dd>


<dt>...</dt>
<dd>additional parameters passed to plot_psbulk()</dd>


<dt>ncol</dt>
<dd>integer Number of columns</dd>


<dt>title</dt>
<dd>logical Whether to add titles to individual plots</dd>


<dt>title_size</dt>
<dd>numeric Size of titles</dd>

</dl>

plot_bulks: Plot a group of pseudobulk HMM profiles

Description

Usage

Value

Arguments

Examples