switch_prob_cm

predict phase switch probablity as a function of genetic distance

internal

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

switch_prob_cm function

<dl><dt>d</dt>
<dd>numeric vector Genetic distance in cM</dd>
<dt>nu</dt>
<dd>numeric Phase switch rate</dd>
<dt>min_p</dt>
<dd>numeric Minimum phase switch probability</dd></dl>

Arguments

predict phase switch probablity as a function of genetic distance — switch_prob_cm

<dl>

<dt>d</dt>
<dd>numeric vector Genetic distance in cM</dd>


<dt>nu</dt>
<dd>numeric Phase switch rate</dd>


<dt>min_p</dt>
<dd>numeric Minimum phase switch probability</dd>

</dl>

switch_prob_cm: predict phase switch probablity as a function of genetic distance

Description

Usage

Value

Arguments