theta_hat_seg

Estimate of imbalance level theta in a segment

internal

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Teng Gao

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Evan Biederstedt

Peter Kharchenko

theta_hat_seg function

<dl><dt>major_count</dt>
<dd>vector of major allele count</dd>
<dt>minor_count</dt>
<dd>vector of minor allele count</dd></dl>

Arguments

Estimate of imbalance level theta in a segment — theta_hat_seg

<dl>

<dt>major_count</dt>
<dd>vector of major allele count</dd>


<dt>minor_count</dt>
<dd>vector of minor allele count</dd>

</dl>

theta_hat_seg: Estimate of imbalance level theta in a segment

Description

Usage

Value

Arguments