Usage
haplo.em.fitter(n.loci, n.subject, weight, geno.vec, n.alleles,
max.haps, max.iter, loci.insert.order, min.posterior,
tol, insert.batch.size, random.start, iseed1, iseed2,
iseed3, verbose)Arguments
n.loci
number of loci in genotype matrix
n.subject
number of subjects in the sample
geno.vec
vectorized genotype matrix
n.alleles
numeric vector giving number of alleles at each marker
max.haps
maximum unique haplotypes in the sample
max.iter
maximum iterations to perform in the fitter
loci.insert.order
order to insert loci for progressive insertion
min.posterior
after insertion and maximization, discard haplotype pairs per person
that do not meet minimum posterior prob
tol
convergence tolerance for E-M steps
insert.batch.size
number of markers to insert per batch
iseed1
random seed for algorithm
iseed2
random seed for algorithm
iseed3
random seed for algorithm
verbose
logical, print long, verbose output from E-M steps?