The fitted values for each person, collapsed over their expanded fitted values due to their multiple possible haplotype pairs
# S3 method for haplo.glm
fitted(object, ...)vector of fitted values
A haplo.glm object
Optional arguments for the method
Many of the subjects in a haplo.glm fit are expanded in the model matrix with weights used to reflect the posterior probability of the subject's haplotype pairs given their genotype. The working fitted values within the fitted object are from this expanded model matrix, and the fitted values from this method are calculated from the weighted fitted value for the subject across all their haplotype pairs.
haplo.glm