ggheatmap

This function produces a ggplot analogue of heatmaply figures
using ggarrange. This function may not always support the same
set of features as , and exporting the heatmaply object with, for example,
<a href="/link/orca?package=heatmaply&version=1.4.2" data-mini-rdoc="heatmaply::orca">orca</a> or <code>heatmaply(mtcars, file = "foo.png")</code>.

Create interactive cluster 'heatmaps' that can be saved as a stand-
alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and
available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to
show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical
method for visualizing high-dimensional data, in which a table of numbers
are encoded as a grid of colored cells. The rows and columns of the matrix
are ordered to highlight patterns and are often accompanied by 'dendrograms'.
'Heatmaps' are used in many fields for visualizing observations, correlations,
missing values patterns, and more. Interactive 'heatmaps' allow the inspection
of specific value by hovering the mouse over a cell, as well as zooming into
a region of the 'heatmap' by dragging a rectangle around the relevant area.
This work is based on the 'ggplot2' and 'plotly.js' engine. It produces
similar 'heatmaps' to 'heatmap.2' with the advantage of speed
('plotly.js' is able to handle larger size matrix), the ability to zoom from
the 'dendrogram' panes, and the placing of factor variables in the sides of the
'heatmap'.

Tal Galili

heatmaply

Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'

Alan O'Callaghan

Jonathan Sidi

Jaehyun Joo

Yoav Benjamini

ggheatmap function

<dl><dt>...</dt>
<dd>Passed to heatmaply</dd>
<dt>widths, heights</dt>
<dd>Relative widths and heights of plots.</dd>
<dt>row_dend_left</dt>
<dd>Logical argument controlling whether the row
dendrogram is placed on the left of the plot.</dd>
<dt>hide_colorbar</dt>
<dd>Logical argument controlling whether the color bar (i.e.:
the legend) is hidden.</dd></dl>

Arguments

This function produces a ggplot analogue of heatmaply figures
using ggarrange. This function may not always support the same
set of features as , and exporting the heatmaply object with, for example,
<a href='https://rdrr.io/pkg/plotly/man/orca.html'>orca</a> or <code>heatmaply(mtcars, file = "foo.png")</code>.

ggplot heatmap equivalent to heatmaply — ggheatmap

<dl>

<dt>...</dt>
<dd>Passed to heatmaply</dd>


<dt>widths, heights</dt>
<dd>Relative widths and heights of plots.</dd>


<dt>row_dend_left</dt>
<dd>Logical argument controlling whether the row
dendrogram is placed on the left of the plot.</dd>


<dt>hide_colorbar</dt>
<dd>Logical argument controlling whether the color bar (i.e.:
the legend) is hidden.</dd>

</dl>

ggheatmap: ggplot heatmap equivalent to heatmaply

Description

Usage

Arguments

Examples