makeUCSCsession

one of following: hg18, mm8, rheM, etc. Default is hg18.

freeze

Initiate UCSC genome browser session given the freeze argument.

hiAnnotator contains set of functions which allow users to
    annotate a GRanges object with custom set of annotations. The
    basic philosophy of this package is to take two GRanges
    objects (query & subject) with common set of seqnames (i.e.
    chromosomes) and return associated annotation per seqnames and rows
    from the query matching seqnames and rows from the subject (i.e.
    genes or cpg islands). The package comes with three types of annotation
    functions which calculates if a position from query is: within a feature,
    near a feature, or count features in defined window sizes. Moreover, each
    function is equipped with parallel backend to utilize the foreach package.
    In addition, the package is equipped with wrapper functions, which finds
    appropriate columns needed to make a GRanges object from a
    common data frame.

makeUCSCsession: Initiate UCSC genome browser session given the freeze argument.

Description

Usage

Arguments

Value

See Also

Examples