pi.dosage

<p>a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries
at each SNP</p>

<p>Estimates nucleotide diversity \(\pi= \sum_l 2 p_ l(1-p_l) 2n/(2n-1)\) from a
dosage matrix</p>

Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.

Jerome Goudet

hierfstat

Estimation and Tests of Hierarchical F-Statistics

pi.dosage: Estimates nucleotide diversity (\(\pi\)) from dosage data

Description

Usage

Arguments

Value