theta.Watt.dosage

<p>a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries
at each SNP</p>

<p>Estimates \(\theta_{Watterson}=S/a\), where \(S\) is the number of segregating sites
in a set of sequences and \(a=1/\sum_i^{n-1} i\).</p>

Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.

Jerome Goudet

hierfstat

Estimation and Tests of Hierarchical F-Statistics

theta.Watt.dosage: Estimates \(\theta_{Watterson}\) from dosage data

Description

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