write.ped

a hierfstat data frame. if pop=NULL, the first column should contain the population identifier, 
otherwise it contains genotypes at the first locus

ilab

fname

character string to use for missing values

na.str

f.id

m.id

the loci position default to unknown

loc.pos

the individual sex. default to unknown

write a ped and a map file suitable for analysis with 
<a href="https://www.cog-genomics.org/plink2">PLINK</a>

Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.

Jerome Goudet

hierfstat

Estimation and Tests of Hierarchical F-Statistics

Thibaut Jombart

Zhian N. Kamvar

Eric Archer

Olivier Hardy

write.ped function

write a ped and a map file suitable for analysis with 
<a href='https://www.cog-genomics.org/plink2'>PLINK</a>

write.ped: Write ped file for analyses with PLINK

Description

Usage

Arguments

Value

References