PlotMisseSpace

A plotting function for visualizing the model space explored in MiSSEGreedy. 
Arguments in <code>...</code> are passed to <code>plot.igraph</code>.

plotting

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.

Jeremy Beaulieu

hisse

Hidden State Speciation and Extinction

Brian O'Meara

Daniel Caetano

James Boyko

Thais Vasconcelos

PlotMisseSpace function

<dl><dt>x</dt>
<dd>a <code>misse</code> list of model fits obtain from <code>MiSSEGreedy</code>.</dd><dt>possible.combos</dt>
<dd>data.frame of parameter combinations to try. See 'Details'.</dd><dt>arrows.by.weight</dt>
<dd>a logical indicating whether arrow direction between adjacent model reflects which model has higher support. The default is <code>FALSE</code> which means arrows show direction of model complexity.</dd><dt>...</dt>
<dd>Additional parameters to control the igraph plot. See <code>plot.igraph</code>.</dd></dl>

Arguments

Author

Plotting function for MiSSEGreedy — PlotMisseSpace

<dl>

<dt>x</dt>
<dd>a <code>misse</code> list of model fits obtain from <code>MiSSEGreedy</code>.</dd>

<dt>possible.combos</dt>
<dd>data.frame of parameter combinations to try. See 'Details'.</dd>

<dt>arrows.by.weight</dt>
<dd>a logical indicating whether arrow direction between adjacent model reflects which model has higher support. The default is <code>FALSE</code> which means arrows show direction of model complexity.</dd>

<dt>...</dt>
<dd>Additional parameters to control the igraph plot. See <code>plot.igraph</code>.</dd>

</dl>

PlotMisseSpace: Plotting function for MiSSEGreedy

Description

Usage

Arguments

Author

Details

References