The <code>hh</code> function creates a heatmap of the half-sib families using the
matrix of opposing homozygotes.

Heatmap

pedigree

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

hh function

<dl>			<dt>oh</dt>
<dd><code>matrix</code> Opposing homozygotes matrix (output of <code>ohg</code>)</dd>			<dt>inferredPedigree</dt>
<dd><code>matrix</code>
				inferred pedigree (output of <code>rpoh</code>)</dd>			<dt>realPedigree</dt>
<dd><code>matrix</code>
				original pedigree</dd> <dt>pedOnly</dt>
<dd><code>logical</code>
				Consider only individuals that are exist in the real pedigree</dd>		</dl>

Arguments

The fuction uses the colour generated by getcol function in the made4 package (Aedin Culhane).

Author

Heatmap of Half-sibs — hh

<dl>

			<dt>oh</dt>
<dd><code>matrix</code> Opposing homozygotes matrix (output of <code>ohg</code>)</dd>

			<dt>inferredPedigree</dt>
<dd><code>matrix</code>
				inferred pedigree (output of <code>rpoh</code>)</dd>

			<dt>realPedigree</dt>
<dd><code>matrix</code>
				original pedigree</dd>

 <dt>pedOnly</dt>
<dd><code>logical</code>
				Consider only individuals that are exist in the real pedigree</dd>

		</dl>

hh: Heatmap of Half-sibs

Description

Usage

Value

Arguments

Author

See Also

Examples