Splits the dataset into half-sib family groups based on a pedigree.

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

hss function

<dl> <dt>pedigree</dt>
<dd><code>matrix</code> the pedigree matrix should contain at least two columns, the first column with the half-sib IDs
and the second column with the sires IDs</dd> <dt>genotype</dt>
<dd><code>matrix</code> genotype matrix with SNP ordered by mapping position in the columns. Data should be numeric. Use 0, 1 and 2 respectively for AA, AB and BB. Use 9 for missing data</dd>
 
<dt>check</dt>
<dd><code>logical</code> check the genotype file for the possible errors</dd>
</dl>

Arguments

Half-sib Family Splitter — hss

<dl>

 <dt>pedigree</dt>
<dd><code>matrix</code> the pedigree matrix should contain at least two columns, the first column with the half-sib IDs
and the second column with the sires IDs</dd>

 <dt>genotype</dt>
<dd><code>matrix</code> genotype matrix with SNP ordered by mapping position in the columns. Data should be numeric. Use 0, 1 and 2 respectively for AA, AB and BB. Use 9 for missing data</dd>
 


<dt>check</dt>
<dd><code>logical</code> check the genotype file for the possible errors</dd>


</dl>

hss: Half-sib Family Splitter

Description

Usage

Value

Arguments

Details

Examples