This function uses the list of matrices (the output of cs) and runs one of the options, on each element of the list, in parallel.
para(halfsibs, cpus = 1, option = "bmh", type = "SOCK", bmh_forwardVectorSize = 30,
bmh_excludeFP = TRUE, bmh_nsap = 3, pmMethod = "constant")Returns a list of matrices with the results (formats specific to the option selected).
list list of matrices of half-sibs (can be generated with hss and cs functions)
numeric number of CPUs (thread)
character type of analysis
character
type of cluster for parallel analysis
integer number of heterozygous sites used to validate recombination events or check for genotyping errors
logical exclude SNPs that may cause heterozygous sites in the sire due to genotyping errors or map errors
integer number of SNPs per block
character method for creating the recombination matrix
Type of analysis can be bmh, ssp, aio, pm, or rec (refer to pm, rplot and vignette for more information about rec).