readGenotype

This function reads and checks genotype files.

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

readGenotype function

<dl>
 <dt>genotypePath</dt>
<dd><code>character</code> genotype path (animals (rows) and SNP (columns), SNP should be coded as 0, 1 and 2 for respectively AA, AB and BB.
Use 9 for missing data. please refer to vignette for more information)</dd>
 <dt>separatorGenotype</dt>
<dd><code>character</code> separator character for genotype</dd>
<dt>check</dt>
<dd><code>logical</code> check the genotype file for possible errors</dd>
</dl>

Arguments

Read and Check the Genotype File — readGenotype

<dl>


 <dt>genotypePath</dt>
<dd><code>character</code> genotype path (animals (rows) and SNP (columns), SNP should be coded as 0, 1 and 2 for respectively AA, AB and BB.
Use 9 for missing data. please refer to vignette for more information)</dd>


 <dt>separatorGenotype</dt>
<dd><code>character</code> separator character for genotype</dd>


<dt>check</dt>
<dd><code>logical</code> check the genotype file for possible errors</dd>


</dl>

readGenotype: Read and Check the Genotype File

Description

Usage

Value

Arguments

Examples