htSample


  This <code>GRangesList</code> contains a subset of drosophila
  melanogaster ChIP-sequencing data
  obtained with the Illumina sequencer.
  An immuno-precipitated and a control input sample were obtained at two
  experimental dates (details not provided as this is still unpublished data).
  In order to save space and let the examples run quicker,
  only reads mapping to the first 500kb of chr2L are included.


datasets

We provide efficient, easy-to-use tools for
High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These
include MDS plots (analogues to PCA), detecting inefficient
immuno-precipitation or over-amplification artifacts, tools to
identify and test for genomic regions with large accumulation
of reads, and visualization of coverage profiles.

Oscar Reina

htSeqTools

Quality Control, Visualization and Processing for
High-Throughput Sequencing data

htSample function

<code>GRangesList</code> where each element contains reads from a
  different sample.
  <code>names(htSample)</code> indicate the group and batch (experimental
  date) that each sample corresponds to.

Format

This <code>GRangesList</code> contains a subset of drosophila
  melanogaster ChIP-sequencing data
  obtained with the Illumina sequencer.
  An immuno-precipitated and a control input sample were obtained at two
  experimental dates (details not provided as this is still unpublished data).
  In order to save space and let the examples run quicker,
  only reads mapping to the first 500kb of chr2L are included.

htSample: Example ChIP-sequencing data with 2 replicates per group obtained in two different dates.

Description

Usage

Arguments

Format

Details

Examples