iCOBRA (version 1.0.2)

plot_deviation: Plot deviations

Description

Plot the deviations between observed scores and the continuous truth variable.

Usage

plot_deviation(cobraplot, title = "", stripsize = 15, titlecol = "black",
  xaxisrange = NULL, plottype = "boxplot", dojitter = TRUE,
  transf = "raw")

Arguments

cobraplot

An COBRAPlot object.

title

A character string giving the title of the plot.

stripsize

A numeric value giving the size of the strip text, when the results are stratified by an annotation.

titlecol

A character string giving the color of the title.

xaxisrange

A numeric vector with two elements, giving the lower and upper boundary of the x-axis, respectively.

plottype

Either "boxplot" or "violin", indicating what type of plot to make.

dojitter

A logical indicating whether to include jittered data points or not.

transf

A character indicating the transformation to apply to the deviations before plotting. Must be one of "raw", "absolute" or "squared"

Value

• A ggplot object

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                   aspects = "deviation")
cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                   incltruth = TRUE)
plot_deviation(cobraplot)