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iSeq (version 1.24.0)

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Description

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

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Version

Version

1.24.0

License

GPL (>= 2)

Maintainer

Qianxing Mo

Last Published

February 15th, 2017

Functions in iSeq (1.24.0)

plotreg

A function used to plot enriched genomic regions
mergetag

Aggregate sequence tags into dynamic genomic windows/bins and count the number of tags in the windows/bins.
iSeq2

Bayesian hierarchical modeling of ChIP-seq data through hidden Ising models
peakreg

Call and merge enriched genomic windows/bins.
nrsf

nrsf data
iSeq1

Bayesian modeling of ChIP-seq data through hidden Ising models