plotpval

Plot lines connecting the the -log10 of pvalues for a series of tests

Method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs.  Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.

Jason Sinnwell

ibdreg

Regression Methods for IBD Linkage with Covariates

plotpval function

<dl><dt>pos</dt>
<dd>an index for the series of tests, usually assuming adjacent tests are
correlated.</dd><dt>pmat</dt>
<dd>matrix of p-values, each column represents a different test, rows
correspond to the pos[ition] index</dd><dt>lty</dt>
<dd>line type, see par()</dd><dt>lwd</dt>
<dd>line width, see par()</dd><dt>col</dt>
<dd>line color, see par()</dd><dt>title</dt>
<dd>title for the top-center of the plot</dd><dt>legend</dt>
<dd>vector of text strings explaning the tests in each column of pmat</dd><dt>xlab</dt>
<dd>x axis label</dd><dt>ylab</dt>
<dd>y axis label</dd></dl>

Arguments

Side Effects

Plot the -log10 of pvalues — plotpval

<dl>

<dt>pos</dt>
<dd>an index for the series of tests, usually assuming adjacent tests are
correlated.</dd>

<dt>pmat</dt>
<dd>matrix of p-values, each column represents a different test, rows
correspond to the pos[ition] index</dd>

<dt>lty</dt>
<dd>line type, see par()</dd>

<dt>lwd</dt>
<dd>line width, see par()</dd>

<dt>col</dt>
<dd>line color, see par()</dd>

<dt>title</dt>
<dd>title for the top-center of the plot</dd>

<dt>legend</dt>
<dd>vector of text strings explaning the tests in each column of pmat</dd>

<dt>xlab</dt>
<dd>x axis label</dd>

<dt>ylab</dt>
<dd>y axis label</dd>

</dl>

plotpval: Plot the -log10 of pvalues

Description

Usage

Value

Arguments

Side Effects

Details

See Also

Examples