sim.ibd.setup

setFounderAlleles

set-up functions for sim.mark.prop

Method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs.  Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.

Jason Sinnwell

ibdreg

Regression Methods for IBD Linkage with Covariates

sim.ibd.setup function

<dl>
<dt>ped</dt>
<dd>a data.frame with data to characterize one pedigree. The columns
contain id codes for person, mother, and father; also a column for sex.</dd><dt>miss.val</dt>
<dd>code(s) for missing values ped</dd><dt>x.linked </dt>
<dd>logical; if TRUE, apply method to x chromosome</dd></dl>

Arguments

set-up functions for sim.mark.prop — sim.ibd.setup

<dl>


<dt>ped</dt>
<dd>a data.frame with data to characterize one pedigree. The columns
contain id codes for person, mother, and father; also a column for sex.</dd>

<dt>miss.val</dt>
<dd>code(s) for missing values ped</dd>

<dt>x.linked </dt>
<dd>logical; if TRUE, apply method to x chromosome</dd>

</dl>

sim.ibd.setup: set-up functions for sim.mark.prop

Description

Usage

Value

Arguments

See Also