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icesTAF (version 3.5-0)

Functions to Support the ICES Transparent Assessment Framework

Description

Functions to support the ICES Transparent Assessment Framework to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.

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Version

Install

install.packages('icesTAF')

Monthly Downloads

490

Version

3.5-0

License

GPL (>= 2)

Maintainer

Arni Magnusson

Last Published

May 15th, 2020

Functions in icesTAF (3.5-0)

dos2unix

Convert Line Endings
is.r.package

Is R Package
latin1.to.utf8

Convert File Encoding
flr2taf

Convert FLR Table to TAF Format
period

Period
get.remote.sha

Get Remote SHA
deps

List Dependencies
plus

Rename Plus Group Column
taf.colors

TAF Colors
taf.bootstrap

Bootstrap TAF Analysis
download

Download File
long2taf

Convert Long Table to TAF Format
xtab2long

Convert Crosstab Table to Long Format
write.taf

Write TAF Table to File
make

Run R Script If Needed
makeAll

Run All TAF Scripts as Needed
sam2taf

Convert SAM Table to TAF Format
taf.library

TAF Library
draft.data

Draft DATA.bib
download.github

Download GitHub Repository
rnd

Round Columns
taf.png

PNG Device
detach.packages

Detach Packages
taf.unzip

Unzip File
div

Divide Columns
long2xtab

Convert Long Table to Crosstab Format
read.taf

Read TAF Table from File
xtab2taf

Convert Crosstab Table to TAF Format
zoom

Zoom
rmdir

Remove Empty Directory
taf.libPaths

Add TAF Library Path
taf.install

TAF Install
taf2long

Convert TAF Table to Long Format
draft.software

Draft SOFTWARE.bib
file.encoding

File Encoding
extract.subdir

Various TAF Helper Functions
makeTAF

Run TAF Script If Needed
mkdir

Create Directory
taf2xtab

Convert TAF Table to Crosstab Format
icesTAF-package

Functions to Support the ICES Transparent Assessment Framework
sourceAll

Run All TAF Scripts
sourceDir

Source Directory
msg

Show Message
lim

Axis Limits
line.endings

Line Endings
os

Operating System
tt

TAF Transpose
summary.taf

Summary Results in TAF Format
taf.session

TAF Session
sourceTAF

Run TAF Script
taf.skeleton

TAF Skeleton
clean.software

Clean TAF Software
clean.data

Clean Data
catage.xtab

Catch at Age in Crosstab Format
convert.spaces

Convert Spaces
clean

Clean TAF Directories
clean.library

Clean TAF Library
catage.taf

Catch at Age in TAF Format
catage.long

Catch at Age in Long Format
cp

Copy Files