network_plot

Most existing approaches for network reconstruction can only infer an overall network
and, also, fail to capture a complete set of network properties. To address these issues,
a new model has been developed, which converts static data into their 'dynamic' form.
'idopNetwork' is an 'R' interface to this model, it can inferring informative, dynamic,
omnidirectional and personalized networks. For more information on functional
clustering part, see Kim et al. (2008) <doi:10.1534/genetics.108.093690>,
Wang et al. (2011) <doi:10.1093/bib/bbr032>. For more information on our model,
see Chen et al. (2019) <doi:10.1038/s41540-019-0116-1>, and Cao et al. (2022)
<doi:10.1080/19490976.2022.2106103>.

Ang Dong

idopNetwork

A Network Tool to Dissect Spatial Community Ecology

network_plot function

<dl><dt>result</dt>
<dd>list result from network_conversion</dd>
<dt>title</dt>
<dd>text for plot title</dd>
<dt>maxeffect</dt>
<dd>control edge size when compare networks</dd>
<dt>type</dt>
<dd>select module effect or microbe effect</dd></dl>

Arguments

generate network plot — network_plot

<dl>

<dt>result</dt>
<dd>list result from network_conversion</dd>


<dt>title</dt>
<dd>text for plot title</dd>


<dt>maxeffect</dt>
<dd>control edge size when compare networks</dd>


<dt>type</dt>
<dd>select module effect or microbe effect</dd>

</dl>

network_plot: generate network plot

Description

Usage

Value

Arguments