imageHTS (version 1.22.0)

installCellPicker: Set up imageHTS web modules

Description

installCellPicker and installWebQuery install the cellPicker and webQuery modules in the local project directory.

cellPicker is a web application that allows the interactive selection/annotation of cells within images using a point-and-click web interface.

webQuery is a web application that allows to query information from the screen by well and well annotation. The webQuery module requires a web server and PHP to be installed.

Usage

installCellPicker(x)
installWebQuery(x)

Arguments

x

An imageHTS object.

Value

None.

Details

After installation, the cellPicker module can be used with the function popCellPicker. x must be annotated using annotate before using installWebQuery. After installation, the webQuery module can be used with the function popWebQuery.

See Also

popCellPicker, popWebQuery

Examples

## initialize imageHTS object using the local submorph screen
local = tempdir()
server = system.file('submorph', package='imageHTS')
x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)
x = annotate(x, 'conf/annotation.txt')

installCellPicker(x)
installWebQuery(x)