Learn R Programming

immunedeconv (version 2.0.3)

dataset_racle: Example RNA-seq dataset from the EPIC publication.

Description

A dataset of four RNA-seq samples from patients with metastatic melanoma and associated 'gold standard' immune cell estimates profiled with fluorescence activated cell sorting (FACS)

Usage

dataset_racle

Arguments

Format

an environment with two objects: (1) expr_mat: gene expression matrix with gene_symbols as rownames and sample identifiers as colnames. (2) ref: FACS measurements in a data.frame with three columns: sample, cell_type, true_fraction