infer (version 1.0.4)

assume: Define a theoretical distribution

Description

This function allows the user to define a null distribution based on theoretical methods. In many infer pipelines, assume() can be used in place of generate() and calculate() to create a null distribution. Rather than outputting a data frame containing a distribution of test statistics calculated from resamples of the observed data, assume() outputs a more abstract type of object just containing the distributional details supplied in the distribution and df arguments. However, assume() output can be passed to visualize(), get_p_value(), and get_confidence_interval() in the same way that simulation-based distributions can.

To define a theoretical null distribution (for use in hypothesis testing), be sure to provide a null hypothesis via hypothesize(). To define a theoretical sampling distribution (for use in confidence intervals), provide the output of specify(). Sampling distributions (only implemented for t and z) lie on the scale of the data, and will be recentered and rescaled to match the corresponding stat given in calculate() to calculate the observed statistic.

Usage

assume(x, distribution, df = NULL, ...)

Value

An infer theoretical distribution that can be passed to helpers like visualize(), get_p_value(), and get_confidence_interval().

Arguments

x

The output of specify() or hypothesize(), giving the observed data, variable(s) of interest, and (optionally) null hypothesis.

distribution

The distribution in question, as a string. One of "F", "Chisq", "t", or "z".

df

Optional. The degrees of freedom parameter(s) for the distribution supplied, as a numeric vector. For distribution = "F", this should have length two (e.g. c(10, 3)). For distribution = "Chisq" or distribution = "t", this should have length one. For distribution = "z", this argument is not required. The package will supply a message if the supplied df argument is different from recognized values. See the Details section below for more information.

...

Currently ignored.

Details

Note that the assumption being expressed here, for use in theory-based inference, only extends to distributional assumptions: the null distribution in question and its parameters. Statistical inference with infer, whether carried out via simulation (i.e. based on pipelines using generate() and calculate()) or theory (i.e. with assume()), always involves the condition that observations are independent of each other.

infer only supports theoretical tests on one or two means via the t distribution and one or two proportions via the z.

For tests comparing two means, if n1 is the group size for one level of the explanatory variable, and n2 is that for the other level, infer will recognize the following degrees of freedom (df) arguments:

• min(n1 - 1, n2 - 1)

• n1 + n2 - 2

• The "parameter" entry of the analogous stats::t.test() call

• The "parameter" entry of the analogous stats::t.test() call with var.equal = TRUE

By default, the package will use the "parameter" entry of the analogous stats::t.test() call with var.equal = FALSE (the default).

Examples

  
# construct theoretical distributions ---------------------------------

# F distribution
# with the `partyid` explanatory variable
gss %>% 
  specify(age ~ partyid) %>% 
  assume(distribution = "F")

# Chi-squared goodness of fit distribution
# on the `finrela` variable
gss %>%
  specify(response = finrela) %>%
  hypothesize(null = "point",
              p = c("far below average" = 1/6,
                    "below average" = 1/6,
                    "average" = 1/6,
                    "above average" = 1/6,
                    "far above average" = 1/6,
                    "DK" = 1/6)) %>%
  assume("Chisq")

# Chi-squared test of independence
# on the `finrela` and `sex` variables
gss %>%
  specify(formula = finrela ~ sex) %>%
  assume(distribution = "Chisq")

# T distribution
gss %>% 
  specify(age ~ college) %>%
  assume("t")

# Z distribution
gss %>%
  specify(response = sex, success = "female") %>%
  assume("z")

if (FALSE) {
# each of these distributions can be passed to infer helper
# functions alongside observed statistics!

# for example, a 1-sample t-test -------------------------------------

# calculate the observed statistic 
obs_stat <- gss %>%
  specify(response = hours) %>%
  hypothesize(null = "point", mu = 40) %>%
  calculate(stat = "t")

# construct a null distribution
null_dist <- gss %>%
  specify(response = hours) %>%
  assume("t")

# juxtapose them visually
visualize(null_dist) + 
  shade_p_value(obs_stat, direction = "both")
  
# calculate a p-value
get_p_value(null_dist, obs_stat, direction = "both")

# or, an F test ------------------------------------------------------

# calculate the observed statistic 
obs_stat <- gss %>% 
  specify(age ~ partyid) %>%
  hypothesize(null = "independence") %>%
  calculate(stat = "F")

# construct a null distribution
null_dist <- gss %>% 
  specify(age ~ partyid) %>%
  assume(distribution = "F")

# juxtapose them visually
visualize(null_dist) + 
  shade_p_value(obs_stat, direction = "both")
  
# calculate a p-value
get_p_value(null_dist, obs_stat, direction = "both")
}