infercnv (version 1.3.3)

add_to_seurat: add_to_seurat()

Description

Add meta.data about CNAs to a Seurat object from an infercnv_obj

Usage

add_to_seurat(seurat_obj = NULL, infercnv_output_path, top_n = 10,
  bp_tolerance = 2e+06)

Arguments

seurat_obj

Seurat object to add meta.data to (default: NULL)

infercnv_output_path

Path to the output folder of the infercnv run to use

top_n

How many of the largest CNA (in number of genes) to get.

bp_tolerance

How many bp of tolerance to have around feature start/end positions for top_n largest CNVs.

Value

seurat_obj