extract_property

Extract a summary property from all results of an inla result

internal

Facilitates spatial and general latent Gaussian modeling using
integrated nested Laplace approximation via the INLA package (<https://www.r-inla.org>).
Additionally, extends the GAM-like model class to more general nonlinear predictor
expressions, and implements a log Gaussian Cox process likelihood for
modeling univariate and spatial point processes based on ecological survey data.
Model components are specified with general inputs and mapping methods to the
latent variables, and the predictors are specified via general R expressions,
with separate expressions for each observation likelihood model in
multi-likelihood models. A prediction method based on fast Monte Carlo sampling
allows posterior prediction of general expressions of the latent variables.
Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019)
<doi:10.1111/2041-210X.13168>.

Finn Lindgren

inlabru

Bayesian Latent Gaussian Modelling using INLA and Extensions

Fabian E. Bachl

David L. Borchers

Daniel Simpson

Lindesay Scott-Howard

Seaton Andy

Suen Man Ho

Roudier Pierre

Meehan Tim

Reddy Peddinenikalva Niharika

Perepolkin Dmytro

extract_property function

<dl><dt>result</dt>
<dd>an <code>inla</code> result object</dd>
<dt>property</dt>
<dd>character; "mean", "sd", "mode", or some other column
identifier for inla result <code>$summary.fixed</code>, <code>$summary.random$label</code>, and
<code>$summary.hyperpar</code>, or "joint_mode". For "joint_mode", the joint latent mode
is extracted, and the joint hyperparameter mode, in the internal scale.
For "predictor_sd" the posterior standard deviations of the linear predictor
are returned.</dd>
<dt>internal_hyperpar</dt>
<dd>logical; if <code>TRUE</code>, use internal scale for
hyperparamter properties. Default is <code>FALSE</code>, except when <code>property</code> is
"joint_mode" which forces <code>internal_hyperpar=TRUE</code>.</dd></dl>

Arguments

Extract a summary property from all results of an inla result — extract_property

<dl>

<dt>result</dt>
<dd>an <code>inla</code> result object</dd>


<dt>property</dt>
<dd>character; "mean", "sd", "mode", or some other column
identifier for inla result <code>$summary.fixed</code>, <code>$summary.random$label</code>, and
<code>$summary.hyperpar</code>, or "joint_mode". For "joint_mode", the joint latent mode
is extracted, and the joint hyperparameter mode, in the internal scale.
For "predictor_sd" the posterior standard deviations of the linear predictor
are returned.</dd>


<dt>internal_hyperpar</dt>
<dd>logical; if <code>TRUE</code>, use internal scale for
hyperparamter properties. Default is <code>FALSE</code>, except when <code>property</code> is
"joint_mode" which forces <code>internal_hyperpar=TRUE</code>.</dd>

</dl>

Extract a summary property from all results of an inla result

extract_property: Extract a summary property from all results of an inla result

Description

Usage

Value

Arguments